Bookkeeping, payroll, and tax for independent healthcare practices, from a Kansas City firm trusted since 1995.

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Should a medical practice use cash or accrual accounting?

For tax purposes, most independent practices are better off on the cash basis. For running the practice, you also want to see accrual numbers. These two goals don’t conflict, and many practices use both.

Cash basis records income when money reaches the bank and expenses when you pay them. The IRS allows it for businesses whose average annual gross receipts over the prior three years fall under a threshold of about $31 to $32 million, adjusted for inflation each year. That covers nearly every independent practice. It’s simpler to keep, and you only pay tax on money you’ve actually collected. That matters when insurance payers take 30 to 90 days to pay a claim.

The problem is what cash basis leaves out. Say a practice has a heavy December, but most of those claims pay in January. On a cash basis, December looks weak and January looks strong, and neither month is accurate. Bills work the same way. A supply order or malpractice premium that hasn’t been paid yet doesn’t show up, so profit looks higher than it really is.

Prepaid revenue is the reverse problem. Direct primary care and concierge practices often collect annual memberships up front. Med spas sell treatment packages. On a cash basis, all of that counts as income the day it’s collected, even though you still owe months of care or several treatments. A January full of annual renewals can make the practice look far more profitable than it is. Owners sometimes hire or spend based on that number and then come up short later in the year.

Accrual reporting shows the full picture. It shows what payers and patients owe you, what you owe vendors, and how much prepaid revenue you haven’t earned yet. That view becomes important at certain moments. A new partner buying in, a bank reviewing a loan for equipment or a building, or a buyer valuing the practice will all want to know what’s owed to the practice and what the practice owes. Partners splitting profits also need numbers that reflect the work actually done in a given period.

The practical approach is to file your return on the cash basis and have your bookkeeper produce accrual-style reports each month. QuickBooks Online can run a profit and loss report either way. Insurance receivables usually live in your billing system rather than your books, though, so someone has to pull the aging report each month and check that reported collections actually reached the bank. We build that check into our monthly bookkeeping for practices that bill insurance.

Changing your tax accounting method later requires filing Form 3115 with the IRS, so it’s worth choosing on purpose rather than by default. Our enrolled agents provide tax services for physicians and practice owners. They can look at your payer mix, membership revenue, and future plans and tell you which setup makes sense for your practice.

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Other Common Questions

How much working capital do I need when opening a new medical practice?

Enough to cover your full expenses, plus your own living costs, until collections catch up. For insurance-based practices that often means six months or more because credentialing and claim payment take time. A month-by-month forecast for the first 12 to 18 months gives you a real number instead of a guess.

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Why don't our insurance collections match what actually hits the bank?

Your billing system and your bank are recording different things at different times. Timing gaps, batched deposits, misread adjustment codes, and payer recoupments all pull the numbers apart. A regular three-way match between remittances, posted payments, and bank deposits shows you exactly where the difference is.

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What is a PTET election and should our practice consider one?

A PTET election lets an S-corp or partnership pay state income tax at the entity level, where it is deductible on the federal return instead of being limited by the SALT cap. For practice owners with income above roughly $500,000, it is often the main way to get any federal benefit from the state income tax they pay.

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What should a dental practice owner review in their books every month?

Review a closed profit and loss statement against last month and the same month last year, your collection ratio, overhead by category as a percentage of collections, and accounts receivable split between insurance and patients. Then check associate pay against production reports and compare your cash to upcoming loan and tax payments.

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How is associate dentist pay calculated from production or collections?

Associate dentist pay is calculated from the associate's written agreement, usually as a percentage of collections or a lower percentage of production. The details that matter most are how production is defined, how insurance write-offs and lab fees are handled, and whether a daily guarantee or draw is reconciled against it.

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How should a med spa track injectable and product inventory?

Log every vial and syringe on arrival with lot number, expiration date, and cost, then tie each opened unit to a patient, treatment, and injector. Count regularly, investigate any gap between units purchased and units charted, and record manufacturer rebates as a reduction of product cost.

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Baker's Bookkeeping & Tax Services has handled bookkeeping, payroll, and tax work from Lenexa, Kansas, since 1995. Today we serve independent medical and healthcare practices nationwide, with tax work and IRS notices handled by credentialed enrolled agents. We prepare around 1,000 returns a year, and most of our clients are families who have trusted us for two or three generations.

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