Bookkeeping, payroll, and tax for independent healthcare practices, from a Kansas City firm trusted since 1995.

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Why is my therapy practice busy but always short on cash?

Being busy and having cash run on different clocks. Your schedule counts sessions delivered. Your bank account counts payments received. In a therapy practice those two numbers can sit weeks apart, and the gap usually gets wider as you grow.

The timing gap is the most common cause. Insurance typically pays two to six weeks after the session, but your clinicians get paid every pay period. By the time the first claims for a new caseload are paid, you may have covered three or four payrolls out of your own reserves. Adding clinicians makes this worse before it gets better, which is why growing practices often feel the squeeze hardest.

Denials and resubmissions stretch the wait even further. A claim rejected for a coding error or an expired authorization can add another 30 to 60 days, and some never get paid if nobody follows up. New clinicians who aren’t credentialed with your payers yet create a similar drain. They’re on payroll, but their sessions often can’t be billed to insurance until credentialing is complete, which can take months.

No-shows and late cancellations cut into revenue without much notice. A full calendar on Monday doesn’t guarantee a full week of billable sessions. If cancellation fees aren’t charged consistently, that lost time is simply gone.

How clinicians are paid also affects cash. If your agreements pay clinicians on billed amounts rather than collected amounts, you’re paying out before you know what insurance will actually pay, and sometimes for sessions that never get paid at all. The structure of clinician pay is a decision for you and your healthcare attorney, but you should understand the cash effect of the agreements you have.

Taxes catch a lot of owners off guard. If you aren’t setting money aside for quarterly estimates, each deadline pulls a large amount out at once. Our tax services for physicians and therapy practice owners include calculating those estimates so you know how much to move into a separate account each month.

Owner draws are the last piece. Many owners take money out based on what’s sitting in the bank. That balance often includes payroll taxes not yet deposited, rent coming due, and money already owed to clinicians. Draws should be based on profit from closed books, not on the account balance.

Finding which of these is your problem usually comes down to three things. The first is books closed every month so you can see actual profit. The second is a receivables aging report showing how much insurance owes you and how old those claims are. The third is a simple cash forecast that lines up expected collections against payroll and bills for the next couple of months. Our monthly bookkeeping also compares what your billing system says was collected against what actually reached the bank, which often turns up payments that went missing.

Most practices find two or three of these causes stacked together. Once you can see them clearly in the numbers, they’re fixable.

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Other Common Questions

How do small medical practices hire well without an HR department?

Write a clear job description, set pay against local benchmarks, and use the same interview process for every candidate. Put the offer in writing and have onboarding paperwork and an employee handbook ready before day one so every hire starts the same way.

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Why don't our insurance collections match what actually hits the bank?

Your billing system and your bank are recording different things at different times. Timing gaps, batched deposits, misread adjustment codes, and payer recoupments all pull the numbers apart. A regular three-way match between remittances, posted payments, and bank deposits shows you exactly where the difference is.

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How much working capital do I need when opening a new medical practice?

Enough to cover your full expenses, plus your own living costs, until collections catch up. For insurance-based practices that often means six months or more because credentialing and claim payment take time. A month-by-month forecast for the first 12 to 18 months gives you a real number instead of a guess.

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Should our practice own its building through a separate entity?

For most practices that own or plan to buy their building, a separate LLC that holds the real estate and leases it to the practice is the better setup. It separates clinical risk from property risk and makes partner changes and a future sale easier. It only works if the lease is set up correctly and each entity keeps its own books.

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Do med spas have to charge sales tax?

Usually on part of what you sell. Medical and aesthetic treatments are generally exempt, but skincare, cosmetics, and other take-home products are taxable in most states. You need a seller's permit wherever you make taxable sales and books that keep product sales separate from service revenue.

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Do functional medicine and integrative clinics have to charge sales tax on supplements?

Often, yes. It depends on the state, whether the practitioner can prescribe, and how the supplements are sold. Shipping supplements to patients in other states can create tax obligations there too.

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Baker's Bookkeeping & Tax Services has handled bookkeeping, payroll, and tax work from Lenexa, Kansas, since 1995. Today we serve independent medical and healthcare practices nationwide, with tax work and IRS notices handled by credentialed enrolled agents. We prepare around 1,000 returns a year, and most of our clients are families who have trusted us for two or three generations.

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